Image Specific Documentation

Featured Images:

Featured images are installed, verified, and maintained by Jetstream staff and are the recommend starting points for your use or development efforts.

A list of Featured images is here : https://use.jetstream-cloud.org/application/images/search?q=Featured

Custom images:

Some of the more commonly used custom images include:

• • Galaxy Standalone image information
    • Galaxy on Jetstream (Info from the Galaxy team)
  • Pop Up Genome Browser Virtual Machine
  • Rstudio Desktop and Shiny Server (Ubuntu 20-based) - A minimum 2-core (m1.small) instance with R 4.x, Rstudio Desktop, and ShinyServer installed
  • MATLAB - A minimum 6-core image with all the toolsets Jetstream is licensed to have. (Full listing here)
  • MATLAB Minimal - A smaller, minimum 2-core image with a subset of MATLAB toolsets (recommended for JTA allocations).
    Though able to fit into 2-cores instances, a 2-core system will naturally perform more slowly than larger flavor sizes.
  • WQ-MAKER with Genemark and BLAT - A minimum 6-core image created by CyVerse for Work-Queue MAKER.
    
    • https://cyverse-wq-maker-tutorial.readthedocs-hosted.com/en/latest/index.html

NCGAS Images:

While not officially Featured images, our colleagues at the National Center for Genomics Analyais (NCGAS) have created and maintain a number of images targeted at genomics and biology. We encourage you to peruse the catalog that they have created concerning biology and bioinformatics software on Jetstream:

https://ncgas.org/services/software/index.html